SNP Detail For rs17570583
1.Mapping Information
Human SNP ID rs17570583
Human chromosome chr5
Human SNP position 172132527
Pig chromosome chr16
Pig SNP position 56503076
2.Annotation Information
PubMed ID23793025
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793025
StudyGenome-wide meta-analysis identifies new susceptibility loci for migraine.
Disease/TraitMigraine - clinic-based
Initial sample5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls
Replication sampleNA
Region5q35.1
Chromosome idchr5
Chromosome position172132527
Reported geneintergenic
Mapped geneSTK10
Upstream gene id
Downstream gene id
SNP gene ids6793
Upstream gene distance
Downstream gene distance
SNP risk allelers17570583-A
SNPsrs17570583
Merged0
SNP id current17570583
Contextintron_variant
Intergenic0
Allele frequency0.08
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta1.23
%95 Ci[1.12-1.35]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST002079