SNP Detail For rs17568628
1.Mapping Information
Human SNP ID rs17568628
Human chromosome chr5
Human SNP position 76751114
Pig chromosome chr2
Pig SNP position 87265841
2.Annotation Information
PubMed ID22139419
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/22139419
StudyNew gene functions in megakaryopoiesis and platelet formation.
Disease/TraitPlatelet count
Initial sample47,005 European ancestry individuals, 1,661 Val Borbera individuals
Replication sampleUp to 18,838 European ancestry individuals
Region5q13.3
Chromosome idchr5
Chromosome position76751114
Reported geneF2R
Mapped geneF2R - F2RL1
Upstream gene id2149
Downstream gene id2150
SNP gene ids
Upstream gene distance15344
Downstream gene distance67894
SNP risk allelers17568628-T
SNPsrs17568628
Merged0
SNP id current17568628
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000000001
Pvalue mlog9
P value text
Or beta6.074
%95 Ci[4.13-8.02] 10^9/l increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitplatelet count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004309
Study accessionGCST001337