Human SNP ID | rs17565841 |
---|---|
Human chromosome | chr15 |
Human SNP position | 27752101 |
Pig chromosome | chr15 |
Pig SNP position | 156876702 |
PubMed ID | 19772629 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19772629 |
Study | Genomewide association study for onset age in Parkinson disease. |
Disease/Trait | Parkinson__s disease (age of onset) |
Initial sample | 857 European ancestry familial cases, 440 idiopathic cases |
Replication sample | 747 European ancestry idiopathic cases |
Region | 15q12 |
Chromosome id | chr15 |
Chromosome position | 27752101 |
Reported gene | OCA2 |
Mapped gene | GABRG3 - OCA2 |
Upstream gene id | 2567 |
Downstream gene id | 4948 |
SNP gene ids | |
Upstream gene distance | 218206 |
Downstream gene distance | 2772 |
SNP risk allele | rs17565841-A |
SNPs | rs17565841 |
Merged | 0 |
SNP id current | 17565841 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 2.84 |
%95 Ci | [NR] years decrease |
Platform | Illumina, Perlegen [1861750] (imputed) |
CNV | N |
Mapped trait | Parkinson__s disease, age at onset |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002508, http://www.ebi.ac.uk/efo/EFO_0004847 |
Study accession | GCST000490 |