SNP Detail For rs17565841
1.Mapping Information
Human SNP ID rs17565841
Human chromosome chr15
Human SNP position 27752101
Pig chromosome chr15
Pig SNP position 156876702
2.Annotation Information
PubMed ID19772629
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19772629
StudyGenomewide association study for onset age in Parkinson disease.
Disease/TraitParkinson__s disease (age of onset)
Initial sample857 European ancestry familial cases, 440 idiopathic cases
Replication sample747 European ancestry idiopathic cases
Region15q12
Chromosome idchr15
Chromosome position27752101
Reported geneOCA2
Mapped geneGABRG3 - OCA2
Upstream gene id2567
Downstream gene id4948
SNP gene ids
Upstream gene distance218206
Downstream gene distance2772
SNP risk allelers17565841-A
SNPsrs17565841
Merged0
SNP id current17565841
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta2.84
%95 Ci[NR] years decrease
PlatformIllumina, Perlegen [1861750] (imputed)
CNVN
Mapped traitParkinson__s disease, age at onset
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002508, http://www.ebi.ac.uk/efo/EFO_0004847
Study accessionGCST000490