SNP Detail For rs17563
1.Mapping Information
Human SNP ID rs17563
Human chromosome chr14
Human SNP position 53950804
Pig chromosome chr1
Pig SNP position 203775001
2.Annotation Information
PubMed ID23704328
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23704328
StudyGenome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.
Disease/TraitPrimary tooth development (time to first tooth eruption)
Initial sample11,118 European ancestry individuals
Replication sample
Region14q22.2
Chromosome idchr14
Chromosome position53950804
Reported geneBMP4
Mapped geneBMP4
Upstream gene id
Downstream gene id
SNP gene ids652
Upstream gene distance
Downstream gene distance
SNP risk allelers17563-G
SNPsrs17563
Merged0
SNP id current17563
Contextstop_lost
Intergenic0
Allele frequencyNR
P value0.00000000000000009
Pvalue mlog16.0457574905606
P value text
Or beta0.239
%95 Ci[0.18-0.3] unit decrease
PlatformIllumina [2446724] (imputed)
CNVN
Mapped traittooth eruption
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0044691
Study accessionGCST002030