SNP Detail For rs17548918
1.Mapping Information
Human SNP ID rs17548918
Human chromosome chr3
Human SNP position 21338599
Pig chromosome chr13
Pig SNP position 9422217
2.Annotation Information
PubMed ID25390645
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25390645
StudyGenome-wide and gene-based association studies of anxiety disorders in European and african american samples.
Disease/TraitAnxiety disorder
Initial sample324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls
Replication sampleNA
Region3p24.3
Chromosome idchr3
Chromosome position21338599
Reported geneintergenic
Mapped geneLOC105376988 - VENTXP7
Upstream gene id105376988
Downstream gene id391518
SNP gene ids
Upstream gene distance117272
Downstream gene distance67127
SNP risk allelers17548918-C
SNPsrs17548918
Merged0
SNP id current17548918
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000009
Pvalue mlog5.04575749056067
P value text(AA, factor score analysis)
Or beta0.26
%95 Ci[NR] unit increase
PlatformAffymetrix [up to 730090]
CNVN
Mapped traitanxiety disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006788
Study accessionGCST002696