SNP Detail For rs17541406
1.Mapping Information
Human SNP ID rs17541406
Human chromosome chr15
Human SNP position 93346230
Pig chromosome chr7
Pig SNP position 91541998
2.Annotation Information
PubMed ID24322204
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/24322204
StudyGenome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.
Disease/TraitBipolar disorder (body mass index interaction)
Initial sample388 European ancestry cases, 1,020 European ancestry controls
Replication sampleNA
Region15q26.1
Chromosome idchr15
Chromosome position93346230
Reported geneMCTP2, SEPHS1P2
Mapped geneLOC105370983
Upstream gene id
Downstream gene id
SNP gene ids105370983
Upstream gene distance
Downstream gene distance
SNP risk allelers17541406-?
SNPsrs17541406
Merged0
SNP id current17541406
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta
%95 Ci
PlatformNR [up to 8466825] (imputed)
CNVN
Mapped traitbipolar disorder, body mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289, http://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002306