SNP Detail For rs17533156
1.Mapping Information
Human SNP ID rs17533156
Human chromosome chr17
Human SNP position 77118623
Pig chromosome chr12
Pig SNP position 4250542
2.Annotation Information
PubMed ID25378659
JournalJ Lipid Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25378659
StudyGenetic Loci Associated with Circulating Levels of Very Long-Chain Saturated Fatty Acids.
Disease/TraitVery long-chain saturated fatty acid levels (fatty acid 20:0)
Initial sample10,129 European ancestry individuals
Replication sampleNA
Region17q25.2
Chromosome idchr17
Chromosome position77118623
Reported geneSEC14L1
Mapped geneLOC105371900, SEC14L1
Upstream gene id
Downstream gene id
SNP gene ids105371900, 6397
Upstream gene distance
Downstream gene distance
SNP risk allelers17533156-T
SNPsrs17533156
Merged0
SNP id current17533156
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta4.475
%95 Ci[NR] Z score increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitvery long-chain saturated fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006796
Study accessionGCST002690