SNP Detail For rs17525472
1.Mapping Information
Human SNP ID rs17525472
Human chromosome chr15
Human SNP position 51677471
Pig chromosome chr1
Pig SNP position 133129926
2.Annotation Information
PubMed ID20159242
JournalJ Allergy Clin Immunol
Linkwww.ncbi.nlm.nih.gov/pubmed/20159242
StudyGenome-wide association study of asthma identifies RAD50-IL13 and HLA-DR/DQ regions.
Disease/TraitAsthma
Initial sample607 European ancestry cases, 3,294 European ancestry controls
Replication sampleNA
Region15q21.2
Chromosome idchr15
Chromosome position51677471
Reported geneSCG3
Mapped geneLOC105370816 - SCG3
Upstream gene id105370816
Downstream gene id29106
SNP gene ids
Upstream gene distance21765
Downstream gene distance3882
SNP risk allelers17525472-?
SNPsrs17525472
Merged0
SNP id current17525472
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [292443]
CNVN
Mapped traitasthma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000270
Study accessionGCST000576