Human SNP ID | rs17525472 |
---|---|
Human chromosome | chr15 |
Human SNP position | 51677471 |
Pig chromosome | chr1 |
Pig SNP position | 133129926 |
PubMed ID | 20159242 |
---|---|
Journal | J Allergy Clin Immunol |
Link | www.ncbi.nlm.nih.gov/pubmed/20159242 |
Study | Genome-wide association study of asthma identifies RAD50-IL13 and HLA-DR/DQ regions. |
Disease/Trait | Asthma |
Initial sample | 607 European ancestry cases, 3,294 European ancestry controls |
Replication sample | NA |
Region | 15q21.2 |
Chromosome id | chr15 |
Chromosome position | 51677471 |
Reported gene | SCG3 |
Mapped gene | LOC105370816 - SCG3 |
Upstream gene id | 105370816 |
Downstream gene id | 29106 |
SNP gene ids | |
Upstream gene distance | 21765 |
Downstream gene distance | 3882 |
SNP risk allele | rs17525472-? |
SNPs | rs17525472 |
Merged | 0 |
SNP id current | 17525472 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [292443] |
CNV | N |
Mapped trait | asthma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000270 |
Study accession | GCST000576 |