PigVar
Overview
Pig SNPs
SNP Table
SNP Hit on Gene
SNP Coding
SNP lincRNA
Search SNPs by Region
Browse on Chromosome
SV
Positive Selection
Help
Manual
Pipeline
Data Statistics
Contact Us
Download
SNP Detail For rs17522122
1.Mapping Information
| Human SNP ID | rs17522122 |
|---|---|
| Human chromosome | chr14 |
| Human SNP position | 32833676 |
| Pig chromosome | chr7 |
| Pig SNP position | 71764830 |
2.Annotation Information
| PubMed ID | 25673413 |
|---|---|
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 14q12 |
| Chromosome id | chr14 |
| Chromosome position | 32833676 |
| Reported gene | AKAP6 |
| Mapped gene | AKAP6 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 9472 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs17522122-T |
| SNPs | rs17522122 |
| Merged | 0 |
| SNP id current | 17522122 |
| Context | 3_prime_UTR_variant |
| Intergenic | 0 |
| Allele frequency | 0.478 |
| P value | 0.000006 |
| Pvalue mlog | 5.22184874961635 |
| P value text | (EA, women) |
| Or beta | 0.019 |
| %95 Ci | [0.011-0.027] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 14q12 |
| Chromosome id | chr14 |
| Chromosome position | 32833676 |
| Reported gene | AKAP6 |
| Mapped gene | AKAP6 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 9472 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs17522122-T |
| SNPs | rs17522122 |
| Merged | 0 |
| SNP id current | 17522122 |
| Context | 3_prime_UTR_variant |
| Intergenic | 0 |
| Allele frequency | 0.476 |
| P value | 0.000003 |
| Pvalue mlog | 5.52287874528033 |
| P value text | (EA) |
| Or beta | 0.015 |
| %95 Ci | [0.0087-0.0217] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25644384 |
| Journal | Mol Psychiatry |
| Link | www.ncbi.nlm.nih.gov/pubmed/25644384 |
| Study | Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53鈥?49). |
| Disease/Trait | Cognitive function |
| Initial sample | 51,719 European ancestry individuals 1,473 Erasmus Rupchen Family individuals, 327 Korculan individuals, 430 Orcadian individuals |
| Replication sample | NA |
| Region | 14q12 |
| Chromosome id | chr14 |
| Chromosome position | 32833676 |
| Reported gene | AKAP6 |
| Mapped gene | AKAP6 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 9472 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs17522122-? |
| SNPs | rs17522122 |
| Merged | 0 |
| SNP id current | 17522122 |
| Context | 3_prime_UTR_variant |
| Intergenic | 0 |
| Allele frequency | NR |
| P value | 0.00000003 |
| Pvalue mlog | 7.52287874528033 |
| P value text | |
| Or beta | 0.0311 |
| %95 Ci | [0.020-0.042] unit decrease |
| Platform | Affymetrix, Illumina [2478500] (imputed) |
| CNV | N |
| Mapped trait | cognition |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003925 |
| Study accession | GCST002774 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 14q12 |
| Chromosome id | chr14 |
| Chromosome position | 32833676 |
| Reported gene | AKAP6 |
| Mapped gene | AKAP6 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 9472 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs17522122-T |
| SNPs | rs17522122 |
| Merged | 0 |
| SNP id current | 17522122 |
| Context | 3_prime_UTR_variant |
| Intergenic | 0 |
| Allele frequency | 0.471 |
| P value | 0.000003 |
| Pvalue mlog | 5.52287874528033 |
| P value text | |
| Or beta | 0.015 |
| %95 Ci | [0.0084-0.0206] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
|
Kunming Institute of Zoology, CAS
and Xi'an University of Technology ©2014-2017 All Rights Reserved.
|
|