SNP Detail For rs17520351
1.Mapping Information
Human SNP ID rs17520351
Human chromosome chr1
Human SNP position 94868631
Pig chromosome chr4
Pig SNP position 134386084
2.Annotation Information
PubMed ID23934736
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/23934736
StudyGenome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.
Disease/TraitMetabolite levels (Dihydroxy docosatrienoic acid)
Initial sample1,260 African American individuals
Replication sampleNA
Region1p21.3
Chromosome idchr1
Chromosome position94868631
Reported geneSLC44A3
Mapped geneSLC44A3
Upstream gene id
Downstream gene id
SNP gene ids126969
Upstream gene distance
Downstream gene distance
SNP risk allelers17520351-C
SNPsrs17520351
Merged0
SNP id current17520351
Contextintron_variant
Intergenic0
Allele frequency
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.2
%95 Ci[0.12-0.29] unit decrease
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitdihydroxy docosatrienoic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005275
Study accessionGCST002120