SNP Detail For rs17515642
1.Mapping Information
Human SNP ID rs17515642
Human chromosome chr10
Human SNP position 9526947
Pig chromosome chr10
Pig SNP position 68311917
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region10p14
Chromosome idchr10
Chromosome position9526947
Reported geneNR
Mapped geneLOC105376402
Upstream gene id
Downstream gene id
SNP gene ids105376402
Upstream gene distance
Downstream gene distance
SNP risk allelers17515642-C
SNPsrs17515642
Merged0
SNP id current17515642
Contextintergenic_variant
Intergenic0
Allele frequency0.855118419830281
P value0.000002
Pvalue mlog5.69897000433601
P value text(IGP21)
Or beta0.2258
%95 Ci[0.13-0.32] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848