SNP Detail For rs17497526
1.Mapping Information
Human SNP ID rs17497526
Human chromosome chr10
Human SNP position 69820364
Pig chromosome chr14
Pig SNP position 78724886
2.Annotation Information
PubMed ID23793441
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793441
StudyParkinson disease loci in the mid-western Amish.
Disease/TraitParkinson__s disease
Initial sample31 Amish cases, 767 Amish controls
Replication sampleNA
Region10q22.1
Chromosome idchr10
Chromosome position69820364
Reported geneCOL13A1
Mapped geneCOL13A1, LOC105378347
Upstream gene id
Downstream gene id
SNP gene ids1305, 105378347
Upstream gene distance
Downstream gene distance
SNP risk allelers17497526-G
SNPsrs17497526
Merged0
SNP id current17497526
Contextintron_variant
Intergenic0
Allele frequency0.15
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta
%95 Ci
PlatformAffymetrix [622812]
CNVN
Mapped traitParkinson__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002508
Study accessionGCST002077