Human SNP ID | rs1746048 |
---|---|
Human chromosome | chr10 |
Human SNP position | 44280376 |
Pig chromosome | chr14 |
Pig SNP position | 100073322 |
PubMed ID | 19198609 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19198609 |
Study | Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants. |
Disease/Trait | Myocardial infarction (early onset) |
Initial sample | 2,967 European ancestry cases, 3,075 European ancestry controls |
Replication sample | 9,746 European ancestry cases, 9,746 European ancestry controls |
Region | 10q11.21 |
Chromosome id | chr10 |
Chromosome position | 44280376 |
Reported gene | CXCL12 |
Mapped gene | LINC00841 - LOC101929465 |
Upstream gene id | 283033 |
Downstream gene id | 101929465 |
SNP gene ids | |
Upstream gene distance | 310469 |
Downstream gene distance | 11712 |
SNP risk allele | rs1746048-C |
SNPs | rs1746048 |
Merged | 0 |
SNP id current | 1746048 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.84 |
P value | 0.000000007 |
Pvalue mlog | 8.15490195998574 |
P value text | |
Or beta | 1.17 |
%95 Ci | [1.11-1.24] |
Platform | Affymetrix [~ 2500000] (imputed) |
CNV | N |
Mapped trait | myocardial infarction |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000612 |
Study accession | GCST000340 |
PubMed ID | 21378990 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21378990 |
Study | Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. |
Disease/Trait | Coronary heart disease |
Initial sample | 22,233 European ancestry cases, 64,762 European ancestry controls |
Replication sample | 56,682 European ancestry cases and controls |
Region | 10q11.21 |
Chromosome id | chr10 |
Chromosome position | 44280376 |
Reported gene | CXCL12 |
Mapped gene | LINC00841 - LOC101929465 |
Upstream gene id | 283033 |
Downstream gene id | 101929465 |
SNP gene ids | |
Upstream gene distance | 310469 |
Downstream gene distance | 11712 |
SNP risk allele | rs1746048-C |
SNPs | rs1746048 |
Merged | 0 |
SNP id current | 1746048 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.87 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.07-1.13] |
Platform | Affymetrix, Illumina [~ 2300000] (imputed) |
CNV | N |
Mapped trait | coronary heart disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001645 |
Study accession | GCST000998 |