SNP Detail For rs17455969
1.Mapping Information
Human SNP ID rs17455969
Human chromosome chr14
Human SNP position 33029670
Pig chromosome chr7
Pig SNP position 71563560
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region14q13.1
Chromosome idchr14
Chromosome position33029670
Reported geneNR
Mapped geneNPAS3
Upstream gene id
Downstream gene id
SNP gene ids64067
Upstream gene distance
Downstream gene distance
SNP risk allelers17455969-?
SNPsrs17455969
Merged
SNP id current17455969
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000001
Pvalue mlog7
P value text(Japanese)
Or beta1.1128
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956