Human SNP ID | rs174534 |
---|---|
Human chromosome | chr11 |
Human SNP position | 61781986 |
Pig chromosome | chr2 |
Pig SNP position | 9316601 |
PubMed ID | 26584805 |
---|---|
Journal | Genes Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/26584805 |
Study | A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population. |
Disease/Trait | Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid) |
Initial sample | 717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls |
Replication sample | NA |
Region | 11q12.2 |
Chromosome id | chr11 |
Chromosome position | 61781986 |
Reported gene | NR |
Mapped gene | MYRF |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 745 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs174534-G |
SNPs | rs174534 |
Merged | 0 |
SNP id current | 174534 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.6663 |
P value | 1E-29 |
Pvalue mlog | 29 |
P value text | |
Or beta | 0.177 |
%95 Ci | [0.15-0.21] unit decrease |
Platform | Illumina [up to 1980188] (imputed) |
CNV | N |
Mapped trait | |
Mapped trait URI | |
Study accession | GCST003237 |
PubMed ID | 25646338 |
Journal | Am J Clin Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/25646338 |
Study | Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Trans fatty acid levels |
Initial sample | 8,013 European ancestry individuals |
Replication sample | 1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals |
Region | 11q12.2 |
Chromosome id | chr11 |
Chromosome position | 61781986 |
Reported gene | NR |
Mapped gene | MYRF |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 745 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs174534-A |
SNPs | rs174534 |
Merged | 0 |
SNP id current | 174534 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.6658 |
P value | 0.00000000004 |
Pvalue mlog | 10.397940008672 |
P value text | (Cis/trans-18:2, EA) |
Or beta | 0.0029 |
%95 Ci | [0.0021-0.0037] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | cis/trans-18:2 fatty acid measurement, trans fatty acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006824, http://www.ebi.ac.uk/efo/EFO_0006821 |
Study accession | GCST002721 |