Human SNP ID | rs174529 |
---|---|
Human chromosome | chr11 |
Human SNP position | 61776489 |
Pig chromosome | chr2 |
Pig SNP position | 9321916 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | HDL cholesterol |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 11q12.2 |
Chromosome id | chr11 |
Chromosome position | 61776489 |
Reported gene | FADS1, FADS2, FADS3 |
Mapped gene | MYRF |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 745 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs174529-T |
SNPs | rs174529 |
Merged | |
SNP id current | 174529 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.61 |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | |
Or beta | 0.041 |
%95 Ci | [0.029-0.053] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002899 |
PubMed ID | 25961943 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Triglycerides |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 11q12.2 |
Chromosome id | chr11 |
Chromosome position | 61776489 |
Reported gene | FADS1, FADS2, FADS3 |
Mapped gene | MYRF |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 745 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs174529-C |
SNPs | rs174529 |
Merged | |
SNP id current | 174529 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.39 |
P value | 4E-20 |
Pvalue mlog | 19.397940008672 |
P value text | |
Or beta | 0.056 |
%95 Ci | [0.044-0.068] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST002897 |