SNP Detail For rs17450784
1.Mapping Information
Human SNP ID rs17450784
Human chromosome chr5
Human SNP position 109680925
Pig chromosome chr2
Pig SNP position 119122066
2.Annotation Information
PubMed ID26242244
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/26242244
StudyAssociation of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.
Disease/TraitExploratory eye movement dysfunction in schizophrenia (responsive search score)
Initial sample128 Han Chinese ancestry cases
Replication sampleNA
Region5q21.3
Chromosome idchr5
Chromosome position109680925
Reported geneMAN2A1
Mapped geneLOC105379118 - MAN2A1
Upstream gene id105379118
Downstream gene id4124
SNP gene ids
Upstream gene distance3176
Downstream gene distance8441
SNP risk allelers17450784-?
SNPsrs17450784
Merged
SNP id current17450784
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta5.089
%95 Ci[3.04-7.14] unit decrease
PlatformIllumina [498648]
CNVN
Mapped traitexploratory eye movement measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007700
Study accessionGCST003065
PubMed ID26242244
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/26242244
StudyAssociation of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.
Disease/TraitExploratory eye movement dysfunction in schizophrenia (number of eye fixations)
Initial sample128 Han Chinese ancestry cases
Replication sampleNA
Region5q21.3
Chromosome idchr5
Chromosome position109680925
Reported geneMAN2A1
Mapped geneLOC105379118 - MAN2A1
Upstream gene id105379118
Downstream gene id4124
SNP gene ids
Upstream gene distance3176
Downstream gene distance8441
SNP risk allelers17450784-?
SNPsrs17450784
Merged
SNP id current17450784
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta15.17
%95 Ci[9.55-20.79] unit decrease
PlatformIllumina [498648]
CNVN
Mapped traitexploratory eye movement measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007700
Study accessionGCST003068