Human SNP ID | rs17450784 |
---|---|
Human chromosome | chr5 |
Human SNP position | 109680925 |
Pig chromosome | chr2 |
Pig SNP position | 119122066 |
PubMed ID | 26242244 |
---|---|
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/26242244 |
Study | Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia. |
Disease/Trait | Exploratory eye movement dysfunction in schizophrenia (responsive search score) |
Initial sample | 128 Han Chinese ancestry cases |
Replication sample | NA |
Region | 5q21.3 |
Chromosome id | chr5 |
Chromosome position | 109680925 |
Reported gene | MAN2A1 |
Mapped gene | LOC105379118 - MAN2A1 |
Upstream gene id | 105379118 |
Downstream gene id | 4124 |
SNP gene ids | |
Upstream gene distance | 3176 |
Downstream gene distance | 8441 |
SNP risk allele | rs17450784-? |
SNPs | rs17450784 |
Merged | |
SNP id current | 17450784 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 5.089 |
%95 Ci | [3.04-7.14] unit decrease |
Platform | Illumina [498648] |
CNV | N |
Mapped trait | exploratory eye movement measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007700 |
Study accession | GCST003065 |
PubMed ID | 26242244 |
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/26242244 |
Study | Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia. |
Disease/Trait | Exploratory eye movement dysfunction in schizophrenia (number of eye fixations) |
Initial sample | 128 Han Chinese ancestry cases |
Replication sample | NA |
Region | 5q21.3 |
Chromosome id | chr5 |
Chromosome position | 109680925 |
Reported gene | MAN2A1 |
Mapped gene | LOC105379118 - MAN2A1 |
Upstream gene id | 105379118 |
Downstream gene id | 4124 |
SNP gene ids | |
Upstream gene distance | 3176 |
Downstream gene distance | 8441 |
SNP risk allele | rs17450784-? |
SNPs | rs17450784 |
Merged | |
SNP id current | 17450784 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | |
Or beta | 15.17 |
%95 Ci | [9.55-20.79] unit decrease |
Platform | Illumina [498648] |
CNV | N |
Mapped trait | exploratory eye movement measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007700 |
Study accession | GCST003068 |