Human SNP ID | rs174468 |
---|---|
Human chromosome | chr11 |
Human SNP position | 61896219 |
Pig chromosome | chr2 |
Pig SNP position | 9185053 |
PubMed ID | 21829377 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21829377 |
Study | Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Phospholipid levels (plasma) |
Initial sample | 8,866 European ancestry individuals |
Replication sample | NA |
Region | 11q12.2 |
Chromosome id | chr11 |
Chromosome position | 61896219 |
Reported gene | RAB3IL1 |
Mapped gene | FADS3 - RAB3IL1 |
Upstream gene id | 3995 |
Downstream gene id | 5866 |
SNP gene ids | |
Upstream gene distance | 4674 |
Downstream gene distance | 1021 |
SNP risk allele | rs174468-A |
SNPs | rs174468 |
Merged | 0 |
SNP id current | 174468 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000000000001 |
Pvalue mlog | 12 |
P value text | (ALA) |
Or beta | 0.01 |
%95 Ci | [NR] % decrease |
Platform | Affymetrix, Illumina [NR] |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001180 |
PubMed ID | 21829377 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21829377 |
Study | Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Phospholipid levels (plasma) |
Initial sample | 8,866 European ancestry individuals |
Replication sample | NA |
Region | 11q12.2 |
Chromosome id | chr11 |
Chromosome position | 61896219 |
Reported gene | RAB3IL1 |
Mapped gene | FADS3 - RAB3IL1 |
Upstream gene id | 3995 |
Downstream gene id | 5866 |
SNP gene ids | |
Upstream gene distance | 4674 |
Downstream gene distance | 1021 |
SNP risk allele | rs174468-A |
SNPs | rs174468 |
Merged | 0 |
SNP id current | 174468 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000000000000002 |
Pvalue mlog | 16.698970004336 |
P value text | (EPA) |
Or beta | 0.05 |
%95 Ci | [NR] % increase |
Platform | Affymetrix, Illumina [NR] |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001178 |
PubMed ID | 21829377 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21829377 |
Study | Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Phospholipid levels (plasma) |
Initial sample | 8,866 European ancestry individuals |
Replication sample | NA |
Region | 11q12.2 |
Chromosome id | chr11 |
Chromosome position | 61896219 |
Reported gene | RAB3IL1 |
Mapped gene | FADS3 - RAB3IL1 |
Upstream gene id | 3995 |
Downstream gene id | 5866 |
SNP gene ids | |
Upstream gene distance | 4674 |
Downstream gene distance | 1021 |
SNP risk allele | rs174468-A |
SNPs | rs174468 |
Merged | 0 |
SNP id current | 174468 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 3E-35 |
Pvalue mlog | 34.5228787452803 |
P value text | (Docosapentaenoic acid) |
Or beta | 0.04 |
%95 Ci | [NR] % increase |
Platform | Affymetrix, Illumina [NR] |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001179 |