SNP Detail For rs17433780
1.Mapping Information
Human SNP ID rs17433780
Human chromosome chr1
Human SNP position 89009135
Pig chromosome chr4
Pig SNP position 139664115
2.Annotation Information
PubMed ID26343869
JournalAtherosclerosis
Linkwww.ncbi.nlm.nih.gov/pubmed/26343869
StudyGenome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.
Disease/TraitCarotid intima media thickness
Initial sample810 Chinese ancestry individuals
Replication sampleNA
Region1p22.2
Chromosome idchr1
Chromosome position89009135
Reported geneGBP3
Mapped geneGBP3
Upstream gene id
Downstream gene id
SNP gene ids2635
Upstream gene distance
Downstream gene distance
SNP risk allelers17433780-?
SNPsrs17433780
Merged
SNP id current17433780
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(Multiple-adjusted)
Or beta
%95 Ci
PlatformIllumina [32817]
CNVN
Mapped traitcarotid artery intima media thickness
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007117
Study accessionGCST003114