SNP Detail For rs17421627
1.Mapping Information
Human SNP ID rs17421627
Human chromosome chr5
Human SNP position 88551768
Pig chromosome chr2
Pig SNP position 98630448
2.Annotation Information
PubMed ID21060863
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21060863
StudyFour novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.
Disease/TraitRetinal vascular caliber
Initial sample15,358 European ancestry individuals
Replication sample6,652 European ancestry individuals
Region5q14.3
Chromosome idchr5
Chromosome position88551768
Reported geneMEF2C
Mapped geneLINC00461
Upstream gene id
Downstream gene id
SNP gene ids645323
Upstream gene distance
Downstream gene distance
SNP risk allelers17421627-G
SNPsrs17421627
Merged0
SNP id current17421627
Contextintron_variant
Intergenic0
Allele frequency0.08
P value0.0000000000000007
Pvalue mlog15.1549019599857
P value text(Retinal venular caliber)
Or beta3
%95 Ci[2.27-3.73] um increase
PlatformAffymetrix, Illumina [2194468] (imputed)
CNVN
Mapped traiteye measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004731
Study accessionGCST000847