Human SNP ID | rs17421627 |
---|---|
Human chromosome | chr5 |
Human SNP position | 88551768 |
Pig chromosome | chr2 |
Pig SNP position | 98630448 |
PubMed ID | 21060863 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21060863 |
Study | Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo. |
Disease/Trait | Retinal vascular caliber |
Initial sample | 15,358 European ancestry individuals |
Replication sample | 6,652 European ancestry individuals |
Region | 5q14.3 |
Chromosome id | chr5 |
Chromosome position | 88551768 |
Reported gene | MEF2C |
Mapped gene | LINC00461 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 645323 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17421627-G |
SNPs | rs17421627 |
Merged | 0 |
SNP id current | 17421627 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.08 |
P value | 0.0000000000000007 |
Pvalue mlog | 15.1549019599857 |
P value text | (Retinal venular caliber) |
Or beta | 3 |
%95 Ci | [2.27-3.73] um increase |
Platform | Affymetrix, Illumina [2194468] (imputed) |
CNV | N |
Mapped trait | eye measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004731 |
Study accession | GCST000847 |