SNP Detail For rs17420782
1.Mapping Information
Human SNP ID rs17420782
Human chromosome chr1
Human SNP position 47553550
Pig chromosome chr6
Pig SNP position 151566355
2.Annotation Information
PubMed ID24047446
JournalWorld J Biol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/24047446
StudyGenome-wide association study of co-occurring anxiety in major depression.
Disease/TraitAnxiety in major depressive disorder
Initial sample1,080 European ancestry cases, 442 European ancestry controls
Replication sampleNA
Region1p33
Chromosome idchr1
Chromosome position47553550
Reported geneRPL21P24
Mapped geneRPL21P24 - TRABD2B
Upstream gene id100270880
Downstream gene id388630
SNP gene ids
Upstream gene distance55169
Downstream gene distance206978
SNP risk allelers17420782-G
SNPsrs17420782
Merged0
SNP id current17420782
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.16
P value0.000009
Pvalue mlog5.04575749056067
P value text(Quantitative)
Or beta0.55
%95 Ci[NR] unit increase
PlatformIllumina [471581]
CNVN
Mapped traitunipolar depression, anxiety
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0005230
Study accessionGCST002202