SNP Detail For rs17413459
1.Mapping Information
Human SNP ID rs17413459
Human chromosome chr5
Human SNP position 143699643
Pig chromosome chr2
Pig SNP position 151501276
2.Annotation Information
PubMed ID26584805
JournalGenes Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/26584805
StudyA genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.
Disease/TraitPlasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)
Initial sample717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls
Replication sampleNA
Region5q31.3
Chromosome idchr5
Chromosome position143699643
Reported geneNR
Mapped geneMIR5197 - LOC100420513
Upstream gene id100846991
Downstream gene id100420513
SNP gene ids
Upstream gene distance19672
Downstream gene distance52255
SNP risk allelers17413459-G
SNPsrs17413459
Merged0
SNP id current17413459
Contextintron_variant
Intergenic1
Allele frequency0.8904
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.0994
%95 Ci[0.057-0.142] unit decrease
PlatformIllumina [up to 1980188] (imputed)
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003237
PubMed ID26584805
JournalGenes Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/26584805
StudyA genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.
Disease/TraitDelta-6 desaturase activity
Initial sample717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls
Replication sampleNA
Region5q31.3
Chromosome idchr5
Chromosome position143699643
Reported geneNR
Mapped geneMIR5197 - LOC100420513
Upstream gene id100846991
Downstream gene id100420513
SNP gene ids
Upstream gene distance19672
Downstream gene distance52255
SNP risk allelers17413459-G
SNPsrs17413459
Merged0
SNP id current17413459
Contextintron_variant
Intergenic1
Allele frequency0.8898
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.1136
%95 Ci[0.044-0.183] unit decrease
PlatformIllumina [up to 1980188] (imputed)
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003244