Human SNP ID | rs17413459 |
---|---|
Human chromosome | chr5 |
Human SNP position | 143699643 |
Pig chromosome | chr2 |
Pig SNP position | 151501276 |
PubMed ID | 26584805 |
---|---|
Journal | Genes Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/26584805 |
Study | A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population. |
Disease/Trait | Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid) |
Initial sample | 717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls |
Replication sample | NA |
Region | 5q31.3 |
Chromosome id | chr5 |
Chromosome position | 143699643 |
Reported gene | NR |
Mapped gene | MIR5197 - LOC100420513 |
Upstream gene id | 100846991 |
Downstream gene id | 100420513 |
SNP gene ids | |
Upstream gene distance | 19672 |
Downstream gene distance | 52255 |
SNP risk allele | rs17413459-G |
SNPs | rs17413459 |
Merged | 0 |
SNP id current | 17413459 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.8904 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 0.0994 |
%95 Ci | [0.057-0.142] unit decrease |
Platform | Illumina [up to 1980188] (imputed) |
CNV | N |
Mapped trait | |
Mapped trait URI | |
Study accession | GCST003237 |
PubMed ID | 26584805 |
Journal | Genes Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/26584805 |
Study | A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population. |
Disease/Trait | Delta-6 desaturase activity |
Initial sample | 717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls |
Replication sample | NA |
Region | 5q31.3 |
Chromosome id | chr5 |
Chromosome position | 143699643 |
Reported gene | NR |
Mapped gene | MIR5197 - LOC100420513 |
Upstream gene id | 100846991 |
Downstream gene id | 100420513 |
SNP gene ids | |
Upstream gene distance | 19672 |
Downstream gene distance | 52255 |
SNP risk allele | rs17413459-G |
SNPs | rs17413459 |
Merged | 0 |
SNP id current | 17413459 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.8898 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 0.1136 |
%95 Ci | [0.044-0.183] unit decrease |
Platform | Illumina [up to 1980188] (imputed) |
CNV | N |
Mapped trait | |
Mapped trait URI | |
Study accession | GCST003244 |