SNP Detail For rs1739654
1.Mapping Information
Human SNP ID rs1739654
Human chromosome chr20
Human SNP position 38349567
Pig chromosome chr17
Pig SNP position 46841230
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region20q11.23
Chromosome idchr20
Chromosome position38349567
Reported geneNR
Mapped geneLBP
Upstream gene id
Downstream gene id
SNP gene ids3929
Upstream gene distance
Downstream gene distance
SNP risk allelers1739654-G
SNPsrs1739654
Merged0
SNP id current1739654
Contextsynonymous_variant
Intergenic0
Allele frequency0.958833931431119
P value0.000005
Pvalue mlog5.30102999566398
P value text(IGP33)
Or beta0.4461
%95 Ci[0.26-0.64] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848