SNP Detail For rs17396340
1.Mapping Information
Human SNP ID rs17396340
Human chromosome chr1
Human SNP position 10226118
Pig chromosome chr6
Pig SNP position 64438132
2.Annotation Information
PubMed ID22139419
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/22139419
StudyNew gene functions in megakaryopoiesis and platelet formation.
Disease/TraitMean platelet volume
Initial sample16,948 European ancestry individuals, 1,652 Val Borbera individuals
Replication sampleUp to 18,838 European ancestry individuals
Region1p36.22
Chromosome idchr1
Chromosome position10226118
Reported geneKIF1B
Mapped geneKIF1B
Upstream gene id
Downstream gene id
SNP gene ids23095
Upstream gene distance
Downstream gene distance
SNP risk allelers17396340-A
SNPsrs17396340
Merged0
SNP id current17396340
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta0.008
%95 Ci[0.0041-0.0119] ln(fl) increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitmean platelet volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004584
Study accessionGCST001335