Human SNP ID | rs17391694 |
---|---|
Human chromosome | chr1 |
Human SNP position | 78157942 |
Pig chromosome | chr6 |
Pig SNP position | 125299935 |
PubMed ID | 20881960 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/20881960 |
Study | Hundreds of variants clustered in genomic loci and biological pathways affect human height. |
Disease/Trait | Height |
Initial sample | 133,653 European ancestry individuals |
Replication sample | 50,074 European ancestry individuals |
Region | 1p31.1 |
Chromosome id | chr1 |
Chromosome position | 78157942 |
Reported gene | GIPC2 |
Mapped gene | GIPC2 - MGC27382 |
Upstream gene id | 54810 |
Downstream gene id | 149047 |
SNP gene ids | |
Upstream gene distance | 19493 |
Downstream gene distance | 71657 |
SNP risk allele | rs17391694-T |
SNPs | rs17391694 |
Merged | 0 |
SNP id current | 17391694 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.12 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | 0.042 |
%95 Ci | [NR] unit increase |
Platform | Affymetrix, Illumina [2834208] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000817 |
PubMed ID | 23128233 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/23128233 |
Study | Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. |
Disease/Trait | Crohn__s disease |
Initial sample | Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls |
Replication sample | Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls |
Region | 1p31.1 |
Chromosome id | chr1 |
Chromosome position | 78157942 |
Reported gene | intergenic |
Mapped gene | GIPC2 - MGC27382 |
Upstream gene id | 54810 |
Downstream gene id | 149047 |
SNP gene ids | |
Upstream gene distance | 19493 |
Downstream gene distance | 71657 |
SNP risk allele | rs17391694-C |
SNPs | rs17391694 |
Merged | 0 |
SNP id current | 17391694 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.889 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.134 |
%95 Ci | [1.077-1.194] |
Platform | Affymetrix, Illumina [1230000] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001729 |
PubMed ID | 26192919 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26192919 |
Study | Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations. |
Disease/Trait | Crohn__s disease |
Initial sample | 5,956 European ancestry cases, 14,927 European ancestry controls |
Replication sample | 14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls |
Region | 1p31.1 |
Chromosome id | chr1 |
Chromosome position | 78157942 |
Reported gene | NR |
Mapped gene | GIPC2 - MGC27382 |
Upstream gene id | 54810 |
Downstream gene id | 149047 |
SNP gene ids | |
Upstream gene distance | 19493 |
Downstream gene distance | 71657 |
SNP risk allele | rs17391694-A |
SNPs | rs17391694 |
Merged | 0 |
SNP id current | 17391694 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.88 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | (EA) |
Or beta | 1.1264268 |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST003044 |
PubMed ID | 25282103 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25282103 |
Study | Defining the role of common variation in the genomic and biological architecture of adult human height. |
Disease/Trait | Height |
Initial sample | 253,288 European ancestry individuals |
Replication sample | 80,067 European ancestry individuals |
Region | 1p31.1 |
Chromosome id | chr1 |
Chromosome position | 78157942 |
Reported gene | GIPC2 |
Mapped gene | GIPC2 - MGC27382 |
Upstream gene id | 54810 |
Downstream gene id | 149047 |
SNP gene ids | |
Upstream gene distance | 19493 |
Downstream gene distance | 71657 |
SNP risk allele | rs17391694-T |
SNPs | rs17391694 |
Merged | 0 |
SNP id current | 17391694 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.123 |
P value | 0.0000000000000004 |
Pvalue mlog | 15.397940008672 |
P value text | |
Or beta | 0.043 |
%95 Ci | [0.033-0.053] unit increase |
Platform | Affymetrix, Illumina, Perlegen [2550858] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST002647 |