SNP Detail For rs1738475
1.Mapping Information
Human SNP ID rs1738475
Human chromosome chr1
Human SNP position 23210398
Pig chromosome chr6
Pig SNP position 75174770
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region1p36.12
Chromosome idchr1
Chromosome position23210398
Reported geneHTR1D
Mapped geneHTR1D - RPL29P6
Upstream gene id3352
Downstream gene id391019
SNP gene ids
Upstream gene distance15669
Downstream gene distance34331
SNP risk allelers1738475-C
SNPsrs1738475
Merged0
SNP id current1738475
Contextregulatory_region_variant
Intergenic1
Allele frequency0.59
P value0.000000000003
Pvalue mlog11.5228787452803
P value text
Or beta0.025
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817