Human SNP ID | rs17382119 |
---|---|
Human chromosome | chr3 |
Human SNP position | 156891313 |
Pig chromosome | chr13 |
Pig SNP position | 104823339 |
PubMed ID | 25656473 |
---|---|
Journal | Am J Med Genet B Neuropsychiatr Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25656473 |
Study | Genome-wide association study of lymphoblast cell viability after clozapine exposure. |
Disease/Trait | Clozapine-induced cytotoxicity |
Initial sample | 90 European ancestry lymphoblast cell lines |
Replication sample | NA |
Region | 3q25.31 |
Chromosome id | chr3 |
Chromosome position | 156891313 |
Reported gene | LEKR1 |
Mapped gene | LEKR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 389170 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17382119-? |
SNPs | rs17382119 |
Merged | 0 |
SNP id current | 17382119 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (AUC) |
Or beta | |
%95 Ci | |
Platform | NR [2092490] |
CNV | N |
Mapped trait | cytotoxicity measurement, response to clozapine |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006952, http://purl.obolibrary.org/obo/GO_0097338 |
Study accession | GCST002777 |