SNP Detail For rs17375901
1.Mapping Information
Human SNP ID rs17375901
Human chromosome chr1
Human SNP position 11792459
Pig chromosome chr6
Pig SNP position 65779685
2.Annotation Information
PubMed ID19597492
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19597492
StudyVariants in ZFHX3 are associated with atrial fibrillation in individuals of European ancestry.
Disease/TraitAtrial fibrillation
Initial sample3,413 cases, 37,105 referents
Replication sample2,145 cases, 4,073 controls
Region1p36.22
Chromosome idchr1
Chromosome position11792459
Reported geneNPPA, MTHFR
Mapped geneMTHFR
Upstream gene id
Downstream gene id
SNP gene ids4524
Upstream gene distance
Downstream gene distance
SNP risk allelers17375901-T
SNPsrs17375901
Merged0
SNP id current17375901
Contextintron_variant
Intergenic0
Allele frequency0.053
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta1.26
%95 Ci
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitatrial fibrillation
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000275
Study accessionGCST000445