SNP Detail For rs17347800
1.Mapping Information
Human SNP ID rs17347800
Human chromosome chr7
Human SNP position 18477656
Pig chromosome chr9
Pig SNP position 96676375
2.Annotation Information
PubMed ID26089329
JournalStroke
Linkwww.ncbi.nlm.nih.gov/pubmed/26089329
StudyMeta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.
Disease/TraitStroke
Initial sampleup to 1,592 African American cases, up to 13,154 African American controls
Replication sampleNA
Region7p21.1
Chromosome idchr7
Chromosome position18477656
Reported geneHDAC9
Mapped geneHDAC9
Upstream gene id
Downstream gene id
SNP gene ids9734
Upstream gene distance
Downstream gene distance
SNP risk allelers17347800-A
SNPsrs17347800
Merged
SNP id current17347800
Contextintron_variant
Intergenic0
Allele frequency0.04
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta0.51
%95 Ci[0.31-0.71] unit increase
PlatformAffymetrix, Illumina [up to 2600000] (imputed)
CNVN
Mapped traitstroke
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000712
Study accessionGCST002987