SNP Detail For rs17329882
1.Mapping Information
Human SNP ID rs17329882
Human chromosome chr4
Human SNP position 119028805
Pig chromosome chr8
Pig SNP position 112420250
2.Annotation Information
PubMed ID25581431
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25581431
StudyIdentification of six new susceptibility loci for invasive epithelial ovarian cancer.
Disease/TraitEpithelial ovarian cancer
Initial sample4,368 European ancestry cases, 9,123 European ancestry controls,
Replication sample2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry sero
Region4q26
Chromosome idchr4
Chromosome position119028805
Reported geneSYNPO2
Mapped geneSYNPO2
Upstream gene id
Downstream gene id
SNP gene ids171024
Upstream gene distance
Downstream gene distance
SNP risk allelers17329882-?
SNPsrs17329882
Merged0
SNP id current17329882
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.09
%95 Ci[1.06-1.13]
PlatformIllumina [up to 10962898] (imputed)
CNVN
Mapped traitMalignant epithelial tumor of ovary
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_398934
Study accessionGCST002748
PubMed ID25581431
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25581431
StudyIdentification of six new susceptibility loci for invasive epithelial ovarian cancer.
Disease/TraitEpithelial ovarian cancer
Initial sample4,368 European ancestry cases, 9,123 European ancestry controls,
Replication sample2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry sero
Region4q26
Chromosome idchr4
Chromosome position119028805
Reported geneSYNPO2
Mapped geneSYNPO2
Upstream gene id
Downstream gene id
SNP gene ids171024
Upstream gene distance
Downstream gene distance
SNP risk allelers17329882-?
SNPsrs17329882
Merged0
SNP id current17329882
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000002
Pvalue mlog7.69897000433601
P value text(Serous)
Or beta1.11
%95 Ci[1.07-1.16]
PlatformIllumina [up to 10962898] (imputed)
CNVN
Mapped traitMalignant epithelial tumor of ovary
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_398934
Study accessionGCST002748