SNP Detail For rs17325431
1.Mapping Information
Human SNP ID rs17325431
Human chromosome chrX
Human SNP position 149380542
Pig chromosome chrX
Pig SNP position 139001887
2.Annotation Information
PubMed ID25866641
JournalBiomark Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25866641
StudyA genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes.
Disease/TraitSurvival in colon cancer
Initial sample334 European ancestry cases
Replication sampleNA
RegionXq28
Chromosome idchrX
Chromosome position149380542
Reported geneintergenic
Mapped geneAFF2 - IDS
Upstream gene id2334
Downstream gene id3423
SNP gene ids
Upstream gene distance379879
Downstream gene distance98222
SNP risk allelers17325431-?
SNPsrs17325431
Merged0
SNP id current17325431
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000003
Pvalue mlog5.52287874528033
P value text(overall survival)
Or beta2.47
%95 Ci[1.69-3.61]
PlatformIllumina [729737]
CNVN
Mapped traitcolonic neoplasm, overall survival
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004288, http://www.ebi.ac.uk/efo/EFO_0000638
Study accessionGCST002822