Human SNP ID | rs17324272 |
---|---|
Human chromosome | chrX |
Human SNP position | 133003128 |
Pig chromosome | chrX |
Pig SNP position | 125116727 |
PubMed ID | 20041166 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20041166 |
Study | Common genetic variation and the control of HIV-1 in humans. |
Disease/Trait | HIV-1 control |
Initial sample | 2,362 European ancestry cases |
Replication sample | NA |
Region | Xq26.2 |
Chromosome id | chrX |
Chromosome position | 133003128 |
Reported gene | intergenic |
Mapped gene | HS6ST2 - USP26 |
Upstream gene id | 90161 |
Downstream gene id | 83844 |
SNP gene ids | |
Upstream gene distance | 41733 |
Downstream gene distance | 22351 |
SNP risk allele | rs17324272-? |
SNPs | rs17324272 |
Merged | 0 |
SNP id current | 17324272 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (progression) |
Or beta | |
%95 Ci | |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | HIV-1 infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180 |
Study accession | GCST000549 |