SNP Detail For rs17324272
1.Mapping Information
Human SNP ID rs17324272
Human chromosome chrX
Human SNP position 133003128
Pig chromosome chrX
Pig SNP position 125116727
2.Annotation Information
PubMed ID20041166
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20041166
StudyCommon genetic variation and the control of HIV-1 in humans.
Disease/TraitHIV-1 control
Initial sample2,362 European ancestry cases
Replication sampleNA
RegionXq26.2
Chromosome idchrX
Chromosome position133003128
Reported geneintergenic
Mapped geneHS6ST2 - USP26
Upstream gene id90161
Downstream gene id83844
SNP gene ids
Upstream gene distance41733
Downstream gene distance22351
SNP risk allelers17324272-?
SNPsrs17324272
Merged0
SNP id current17324272
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text(progression)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitHIV-1 infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180
Study accessionGCST000549