SNP Detail For rs17316633
1.Mapping Information
Human SNP ID rs17316633
Human chromosome chr4
Human SNP position 109904478
Pig chromosome chr8
Pig SNP position 120421915
2.Annotation Information
PubMed ID19896111
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19896111
StudyCommon variants in the trichohyalin gene are associated with straight hair in Europeans.
Disease/TraitHair morphology
Initial sample4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals
Replication sampleNA
Region4q25
Chromosome idchr4
Chromosome position109904478
Reported geneEGF
Mapped geneKRT19P3 - EGF
Upstream gene id442114
Downstream gene id1950
SNP gene ids
Upstream gene distance24585
Downstream gene distance8405
SNP risk allelers17316633-A
SNPsrs17316633
Merged0
SNP id current17316633
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta
%95 Ci
PlatformIllumina [~ 1000000] (imputed)
CNVN
Mapped traithair morphology
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005038
Study accessionGCST000519