SNP Detail For rs17314229
1.Mapping Information
Human SNP ID rs17314229
Human chromosome chr10
Human SNP position 13974159
Pig chromosome chr10
Pig SNP position 52502353
2.Annotation Information
PubMed ID22430674
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/22430674
StudyGenome-wide haplotype association study identifies the FRMD4A gene as a risk locus for Alzheimer__s disease.
Disease/TraitAlzheimer__s disease
Initial sample2,025 European ancestry cases, 5,328 European ancestry controls
Replication sample7,913 European ancestry cases, 10,417 European ancestry controls
Region10p13
Chromosome idchr10;10;10
Chromosome position13949865;13974159;13966445
Reported geneFRMD4A
Mapped geneFRMD4A; FRMD4A; FRMD4A
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers7081208-A; rs17314229-C; rs2446581-A
SNPsrs7081208; rs17314229; rs2446581
Merged0
SNP id current
Contextintron_variant; intron_variant; intron_variant
Intergenic
Allele frequency0.028
P value0.0000000001
Pvalue mlog10
P value text
Or beta1.68
%95 Ci[1.43-1.96]
PlatformIllumina [287956]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST001449