SNP Detail For rs17309827
1.Mapping Information
Human SNP ID rs17309827
Human chromosome chr6
Human SNP position 3433084
Pig chromosome chr7
Pig SNP position 2176866
2.Annotation Information
PubMed ID21102463
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102463
StudyGenome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample6,333 European ancestry cases, 15,056 European ancestry controls
Replication sample15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios
Region6p25.2
Chromosome idchr6
Chromosome position3433084
Reported geneintergenic
Mapped geneSLC22A23
Upstream gene id
Downstream gene id
SNP gene ids63027
Upstream gene distance
Downstream gene distance
SNP risk allelers17309827-T
SNPsrs17309827
Merged0
SNP id current17309827
Contextintron_variant
Intergenic0
Allele frequency0.639
P value0.000000007
Pvalue mlog8.15490195998574
P value text
Or beta1.1
%95 Ci[1.05-1.16]
PlatformAffymetrix, Illumina [953241] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000879