SNP Detail For rs17301013
1.Mapping Information
Human SNP ID rs17301013
Human chromosome chr1
Human SNP position 174343675
Pig chromosome chr9
Pig SNP position 128211815
2.Annotation Information
PubMed ID26606652
JournalArthritis Rheumatol
Linkwww.ncbi.nlm.nih.gov/pubmed/26606652
StudyGWAS in an Amerindian ancestry population reveals novel systemic lupus erythematosus risk loci and the role of European admixture.
Disease/TraitSystemic lupus erythematosus
Initial sample862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls
Replication sampleNA
Region1q25.1
Chromosome idchr1
Chromosome position174343675
Reported geneRABGAP1L
Mapped geneRABGAP1L
Upstream gene id
Downstream gene id
SNP gene ids9910
Upstream gene distance
Downstream gene distance
SNP risk allelers17301013-?
SNPsrs17301013
Merged0
SNP id current17301013
Contextintron_variant
Intergenic0
Allele frequency0.583
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta1.4285715
%95 Ci[1.23-1.64]
PlatformIllumina [580483] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003252