SNP Detail For rs17277546
1.Mapping Information
Human SNP ID rs17277546
Human chromosome chr7
Human SNP position 99891948
Pig chromosome chr3
Pig SNP position 7094171
2.Annotation Information
PubMed ID21533175
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21533175
StudyEight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.
Disease/TraitDehydroepiandrosterone sulphate levels
Initial sample14,846 European ancestry individuals
Replication sampleNA
Region7q22.1
Chromosome idchr7
Chromosome position99891948
Reported geneTRIM4, CYP3A43
Mapped geneTRIM4
Upstream gene id
Downstream gene id
SNP gene ids89122
Upstream gene distance
Downstream gene distance
SNP risk allelers17277546-A
SNPsrs17277546
Merged0
SNP id current17277546
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.05
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta0.11
%95 Ci[0.07-0.15] umol/L decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traithormone measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004730
Study accessionGCST001038
PubMed ID21886157
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/21886157
StudyHuman metabolic individuality in biomedical and pharmaceutical research.
Disease/TraitMetabolic traits
Initial sample2,820 European ancestry individuals
Replication sampleNA
Region7q22.1
Chromosome idchr7
Chromosome position99891948
Reported geneCYP3A4
Mapped geneTRIM4
Upstream gene id
Downstream gene id
SNP gene ids89122
Upstream gene distance
Downstream gene distance
SNP risk allelers17277546-A
SNPsrs17277546
Merged0
SNP id current17277546
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.045
P value9E-40
Pvalue mlog39.0457574905606
P value text(androsterone sulfate + 2 other traits)
Or beta0.476
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [534665]
CNVN
Mapped traitmetabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004725
Study accessionGCST001217