SNP Detail For rs17268785
1.Mapping Information
Human SNP ID rs17268785
Human chromosome chr2
Human SNP position 56364948
Pig chromosome chr3
Pig SNP position 89712145
2.Annotation Information
PubMed ID21102462
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102462
StudyThirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.
Disease/TraitMenarche (age at onset)
Initial sample86,142 European ancestry female individuals, 557 Old Order Amish female individuals, 1,103 Erasmus Rucphen female individuals
Replication sampleUp to 12,813 European ancestry female individuals, 910 Val Borbera female individuals, 348 Orcadian female individuals, 338 Friuli Venezia Giulia female individuals, 322 Carlantino female individuals
Region2p16.1
Chromosome idchr2
Chromosome position56364948
Reported geneCCDC85A
Mapped geneCCDC85A
Upstream gene id
Downstream gene id
SNP gene ids114800
Upstream gene distance
Downstream gene distance
SNP risk allelers17268785-G
SNPsrs17268785
Merged0
SNP id current17268785
Contextintron_variant
Intergenic0
Allele frequency0.17
P value0.0000000001
Pvalue mlog10
P value text
Or beta3.2
%95 Ci[2.22-4.18] week increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST000880