Human SNP ID | rs172629 |
---|---|
Human chromosome | chr4 |
Human SNP position | 54541595 |
Pig chromosome | chr8 |
Pig SNP position | 43352886 |
PubMed ID | 19862010 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19862010 |
Study | Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium. |
Disease/Trait | Mean corpuscular volume |
Initial sample | 24,167 European ancestry individuals |
Replication sample | 9,456 European ancestry individuals |
Region | 4q12 |
Chromosome id | chr4 |
Chromosome position | 54541595 |
Reported gene | KIT |
Mapped gene | LOC105377656 - LOC339978 |
Upstream gene id | 105377656 |
Downstream gene id | 339978 |
SNP gene ids | |
Upstream gene distance | 185491 |
Downstream gene distance | 61616 |
SNP risk allele | rs172629-G |
SNPs | rs172629 |
Merged | 0 |
SNP id current | 172629 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000000000000001 |
Pvalue mlog | 15 |
P value text | |
Or beta | 0 |
%95 Ci | [0.003-0.006] fl decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | mean corpuscular volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004526 |
Study accession | GCST000503 |
PubMed ID | 20139978 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Mean corpuscular volume |
Initial sample | 14,364 Japanese ancestry individuals |
Replication sample | NA |
Region | 4q12 |
Chromosome id | chr4 |
Chromosome position | 54541595 |
Reported gene | KIT |
Mapped gene | LOC105377656 - LOC339978 |
Upstream gene id | 105377656 |
Downstream gene id | 339978 |
SNP gene ids | |
Upstream gene distance | 185491 |
Downstream gene distance | 61616 |
SNP risk allele | rs172629-C |
SNPs | rs172629 |
Merged | 0 |
SNP id current | 172629 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.74 |
P value | 1E-27 |
Pvalue mlog | 27 |
P value text | |
Or beta | 0.698 |
%95 Ci | [0.573-0.824] unit decrease |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | mean corpuscular volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004526 |
Study accession | GCST000585 |