Human SNP ID | rs17261688 |
---|---|
Human chromosome | chr4 |
Human SNP position | 160107665 |
Pig chromosome | chr8 |
Pig SNP position | 51259211 |
PubMed ID | 23725790 |
---|---|
Journal | Twin Res Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23725790 |
Study | GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association. |
Disease/Trait | DNA methylation (variation) |
Initial sample | 256 European ancestry individuals |
Replication sample | 384 European ancestry individuals |
Region | 4q32.1 |
Chromosome id | chr4 |
Chromosome position | 160107665 |
Reported gene | intergenic |
Mapped gene | RAPGEF2 - LOC105377512 |
Upstream gene id | 9693 |
Downstream gene id | 105377512 |
SNP gene ids | |
Upstream gene distance | 747503 |
Downstream gene distance | 411199 |
SNP risk allele | rs17261688-G |
SNPs | rs17261688 |
Merged | 0 |
SNP id current | 17261688 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.12 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (NESPAS-ICR) |
Or beta | |
%95 Ci | |
Platform | Illumina [515966] |
CNV | N |
Mapped trait | DNA methylation |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0006306 |
Study accession | GCST002058 |