SNP Detail For rs17261688
1.Mapping Information
Human SNP ID rs17261688
Human chromosome chr4
Human SNP position 160107665
Pig chromosome chr8
Pig SNP position 51259211
2.Annotation Information
PubMed ID23725790
JournalTwin Res Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23725790
StudyGWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.
Disease/TraitDNA methylation (variation)
Initial sample256 European ancestry individuals
Replication sample384 European ancestry individuals
Region4q32.1
Chromosome idchr4
Chromosome position160107665
Reported geneintergenic
Mapped geneRAPGEF2 - LOC105377512
Upstream gene id9693
Downstream gene id105377512
SNP gene ids
Upstream gene distance747503
Downstream gene distance411199
SNP risk allelers17261688-G
SNPsrs17261688
Merged0
SNP id current17261688
Contextintergenic_variant
Intergenic1
Allele frequency0.12
P value0.000003
Pvalue mlog5.52287874528033
P value text(NESPAS-ICR)
Or beta
%95 Ci
PlatformIllumina [515966]
CNVN
Mapped traitDNA methylation
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0006306
Study accessionGCST002058