SNP Detail For rs17249141
1.Mapping Information
Human SNP ID rs17249141
Human chromosome chr19
Human SNP position 11089332
Pig chromosome chr2
Pig SNP position 70206912
2.Annotation Information
PubMed ID23726366
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23726366
StudyGenome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.
Disease/TraitLDL cholesterol
Initial sample7,861 African American individuals, 3,425 Hispanic individuals
Replication sample7,138 African American individuals
Region19p13.2
Chromosome idchr19
Chromosome position11089332
Reported geneLDLR
Mapped geneSMARCA4 - LDLR
Upstream gene id6597
Downstream gene id3949
SNP gene ids
Upstream gene distance27050
Downstream gene distance30
SNP risk allelers17249141-T
SNPsrs17249141
Merged0
SNP id current17249141
Contextupstream_gene_variant
Intergenic1
Allele frequency0.0126
P value0.00000000000000002
Pvalue mlog16.698970004336
P value text(AA)
Or beta32.93
%95 Ci[NR] unit decrease
PlatformAffymetrix [NR]
CNVN
Mapped traitlipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004529
Study accessionGCST002042