Human SNP ID | rs17249141 |
---|---|
Human chromosome | chr19 |
Human SNP position | 11089332 |
Pig chromosome | chr2 |
Pig SNP position | 70206912 |
PubMed ID | 23726366 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23726366 |
Study | Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations. |
Disease/Trait | LDL cholesterol |
Initial sample | 7,861 African American individuals, 3,425 Hispanic individuals |
Replication sample | 7,138 African American individuals |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 11089332 |
Reported gene | LDLR |
Mapped gene | SMARCA4 - LDLR |
Upstream gene id | 6597 |
Downstream gene id | 3949 |
SNP gene ids | |
Upstream gene distance | 27050 |
Downstream gene distance | 30 |
SNP risk allele | rs17249141-T |
SNPs | rs17249141 |
Merged | 0 |
SNP id current | 17249141 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.0126 |
P value | 0.00000000000000002 |
Pvalue mlog | 16.698970004336 |
P value text | (AA) |
Or beta | 32.93 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix [NR] |
CNV | N |
Mapped trait | lipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004529 |
Study accession | GCST002042 |