Human SNP ID | rs1722636 |
---|---|
Human chromosome | chr2 |
Human SNP position | 160925262 |
Pig chromosome | chr15 |
Pig SNP position | 75069412 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Subcutaneous adipose tissue |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 2q24.2 |
Chromosome id | chr2 |
Chromosome position | 160925262 |
Reported gene | TANK |
Mapped gene | LOC105373718 - LOC105373719 |
Upstream gene id | 105373718 |
Downstream gene id | 105373719 |
SNP gene ids | |
Upstream gene distance | 276753 |
Downstream gene distance | 142514 |
SNP risk allele | rs1722636-T |
SNPs | rs1722636 |
Merged | 0 |
SNP id current | 1722636 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.23 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | (women) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | subcutaneous adipose tissue measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004766 |
Study accession | GCST001521 |