SNP Detail For rs1722636
1.Mapping Information
Human SNP ID rs1722636
Human chromosome chr2
Human SNP position 160925262
Pig chromosome chr15
Pig SNP position 75069412
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitSubcutaneous adipose tissue
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region2q24.2
Chromosome idchr2
Chromosome position160925262
Reported geneTANK
Mapped geneLOC105373718 - LOC105373719
Upstream gene id105373718
Downstream gene id105373719
SNP gene ids
Upstream gene distance276753
Downstream gene distance142514
SNP risk allelers1722636-T
SNPsrs1722636
Merged0
SNP id current1722636
Contextregulatory_region_variant
Intergenic1
Allele frequency0.23
P value0.0000006
Pvalue mlog6.22184874961635
P value text(women)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitsubcutaneous adipose tissue measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004766
Study accessionGCST001521