SNP Detail For rs17208368
1.Mapping Information
Human SNP ID rs17208368
Human chromosome chr16
Human SNP position 55038095
Pig chromosome chr6
Pig SNP position 27896584
2.Annotation Information
PubMed ID25108383
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25108383
StudyGenome-wide association analyses identify variants in developmental genes associated with hypospadias.
Disease/TraitHypospadias
Initial sample1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls
Replication sample1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls
Region16q12.2
Chromosome idchr16
Chromosome position55038095
Reported geneIRX5
Mapped geneIRX5 - LOC105371278
Upstream gene id10265
Downstream gene id105371278
SNP gene ids
Upstream gene distance103610
Downstream gene distance4903
SNP risk allelers17208368-A
SNPsrs17208368
Merged0
SNP id current17208368
Contextintergenic_variant
Intergenic1
Allele frequency0.159
P value0.000000000000003
Pvalue mlog14.5228787452803
P value text
Or beta1.41
%95 Ci[NR]
PlatformIllumina [8207076] (imputed)
CNVN
Mapped traithypospadias
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004209
Study accessionGCST002563