Human SNP ID | rs17208368 |
---|---|
Human chromosome | chr16 |
Human SNP position | 55038095 |
Pig chromosome | chr6 |
Pig SNP position | 27896584 |
PubMed ID | 25108383 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25108383 |
Study | Genome-wide association analyses identify variants in developmental genes associated with hypospadias. |
Disease/Trait | Hypospadias |
Initial sample | 1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls |
Replication sample | 1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls |
Region | 16q12.2 |
Chromosome id | chr16 |
Chromosome position | 55038095 |
Reported gene | IRX5 |
Mapped gene | IRX5 - LOC105371278 |
Upstream gene id | 10265 |
Downstream gene id | 105371278 |
SNP gene ids | |
Upstream gene distance | 103610 |
Downstream gene distance | 4903 |
SNP risk allele | rs17208368-A |
SNPs | rs17208368 |
Merged | 0 |
SNP id current | 17208368 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.159 |
P value | 0.000000000000003 |
Pvalue mlog | 14.5228787452803 |
P value text | |
Or beta | 1.41 |
%95 Ci | [NR] |
Platform | Illumina [8207076] (imputed) |
CNV | N |
Mapped trait | hypospadias |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004209 |
Study accession | GCST002563 |