SNP Detail For rs17207042
1.Mapping Information
Human SNP ID rs17207042
Human chromosome chr18
Human SNP position 69870115
Pig chromosome chr1
Pig SNP position 169414141
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region18q22.2
Chromosome idchr18
Chromosome position69870115
Reported geneNR
Mapped geneCD226
Upstream gene id
Downstream gene id
SNP gene ids10666
Upstream gene distance
Downstream gene distance
SNP risk allelers17207042-?
SNPsrs17207042
Merged
SNP id current17207042
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000002
Pvalue mlog8.69897000433601
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043