SNP Detail For rs17194490
1.Mapping Information
Human SNP ID rs17194490
Human chromosome chr3
Human SNP position 2506102
Pig chromosome chr13
Pig SNP position 65173323
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
Region3p26.3
Chromosome idchr3
Chromosome position2506102
Reported geneCNTN4
Mapped geneCNTN4
Upstream gene id
Downstream gene id
SNP gene ids152330
Upstream gene distance
Downstream gene distance
SNP risk allelers17194490-T
SNPsrs17194490
Merged0
SNP id current17194490
Contextintron_variant
Intergenic0
Allele frequency0.156
P value0.00000000003
Pvalue mlog10.5228787452803
P value text
Or beta1.101
%95 Ci[1.070-1.132]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region3p26.3
Chromosome idchr3
Chromosome position2506102
Reported geneNR
Mapped geneCNTN4
Upstream gene id
Downstream gene id
SNP gene ids152330
Upstream gene distance
Downstream gene distance
SNP risk allelers17194490-T
SNPsrs17194490
Merged0
SNP id current17194490
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000001
Pvalue mlog11
P value text
Or beta1.1
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048