SNP Detail For rs1719271
1.Mapping Information
Human SNP ID rs1719271
Human chromosome chr15
Human SNP position 64891602
Pig chromosome chr1
Pig SNP position 117923147
2.Annotation Information
PubMed ID22139419
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/22139419
StudyNew gene functions in megakaryopoiesis and platelet formation.
Disease/TraitPlatelet count
Initial sample47,005 European ancestry individuals, 1,661 Val Borbera individuals
Replication sampleUp to 18,838 European ancestry individuals
Region15q22.31
Chromosome idchr15
Chromosome position64891602
Reported geneANKDD1A
Mapped genePLEKHO2 - ANKDD1A
Upstream gene id80301
Downstream gene id348094
SNP gene ids
Upstream gene distance23600
Downstream gene distance20300
SNP risk allelers1719271-G
SNPsrs1719271
Merged0
SNP id current1719271
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.00000000001
Pvalue mlog11
P value text
Or beta3.414
%95 Ci[2.43-4.4] 10^9/l increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitplatelet count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004309
Study accessionGCST001337