Human SNP ID | rs17178006 |
---|---|
Human chromosome | chr12 |
Human SNP position | 65324519 |
Pig chromosome | chr5 |
Pig SNP position | 33028959 |
PubMed ID | 22504421 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22504421 |
Study | Common variants at 12q14 and 12q24 are associated with hippocampal volume. |
Disease/Trait | Hippocampal volume |
Initial sample | 9,232 European ancestry individuals |
Replication sample | 2,318 European ancestry individuals |
Region | 12q14.3 |
Chromosome id | chr12 |
Chromosome position | 65324519 |
Reported gene | MSRB3 |
Mapped gene | MSRB3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 253827 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17178006-G |
SNPs | rs17178006 |
Merged | 0 |
SNP id current | 17178006 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.1 |
P value | 0.00000000005 |
Pvalue mlog | 10.3010299956639 |
P value text | |
Or beta | 123.8 |
%95 Ci | [86.76-160.84] mm3 decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | hippocampal volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005035 |
Study accession | GCST001485 |
PubMed ID | 25607358 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25607358 |
Study | Common genetic variants influence human subcortical brain structures. |
Disease/Trait | Subcortical brain region volumes |
Initial sample | up to 13,171 European ancestry individuals |
Replication sample | up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals |
Region | 12q14.3 |
Chromosome id | chr12 |
Chromosome position | 65324519 |
Reported gene | MSRB3 |
Mapped gene | MSRB3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 253827 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17178006-? |
SNPs | rs17178006 |
Merged | 0 |
SNP id current | 17178006 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | (Hippocampus, EA) |
Or beta | 44.27 |
%95 Ci | [27.43-61.11] unit increase |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | hippocampal volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005035 |
Study accession | GCST002756 |