Human SNP ID | rs17175227 |
---|---|
Human chromosome | chr14 |
Human SNP position | 70035333 |
Pig chromosome | chr7 |
Pig SNP position | 99950571 |
PubMed ID | 24057671 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24057671 |
Study | Genome-wide association study of ancestry-specific TB risk in the South African Coloured population. |
Disease/Trait | Tuberculosis |
Initial sample | 642 South African coloured cases, 91 South African coloured controls |
Replication sample | NA |
Region | 14q24.2 |
Chromosome id | chr14 |
Chromosome position | 70035333 |
Reported gene | SMOC1 |
Mapped gene | SMOC1 - SLC8A3 |
Upstream gene id | 64093 |
Downstream gene id | 6547 |
SNP gene ids | |
Upstream gene distance | 2967 |
Downstream gene distance | 8884 |
SNP risk allele | rs17175227-G |
SNPs | rs17175227 |
Merged | 0 |
SNP id current | 17175227 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.98 |
P value | 0.000000009 |
Pvalue mlog | 8.04575749056067 |
P value text | |
Or beta | 7.1429 |
%95 Ci | [NR] |
Platform | Affymetrix [up to 4467279] (imputed) |
CNV | N |
Mapped trait | Tuberculosis |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_3389 |
Study accession | GCST002198 |