SNP Detail For rs17175227
1.Mapping Information
Human SNP ID rs17175227
Human chromosome chr14
Human SNP position 70035333
Pig chromosome chr7
Pig SNP position 99950571
2.Annotation Information
PubMed ID24057671
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24057671
StudyGenome-wide association study of ancestry-specific TB risk in the South African Coloured population.
Disease/TraitTuberculosis
Initial sample642 South African coloured cases, 91 South African coloured controls
Replication sampleNA
Region14q24.2
Chromosome idchr14
Chromosome position70035333
Reported geneSMOC1
Mapped geneSMOC1 - SLC8A3
Upstream gene id64093
Downstream gene id6547
SNP gene ids
Upstream gene distance2967
Downstream gene distance8884
SNP risk allelers17175227-G
SNPsrs17175227
Merged0
SNP id current17175227
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.98
P value0.000000009
Pvalue mlog8.04575749056067
P value text
Or beta7.1429
%95 Ci[NR]
PlatformAffymetrix [up to 4467279] (imputed)
CNVN
Mapped traitTuberculosis
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_3389
Study accessionGCST002198