SNP Detail For rs17168526
1.Mapping Information
Human SNP ID rs17168526
Human chromosome chr7
Human SNP position 7531789
Pig chromosome chr9
Pig SNP position 85492467
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted IL-1beta)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region7p21.3
Chromosome idchr7
Chromosome position7531789
Reported geneCOL28A1
Mapped geneCOL28A1
Upstream gene id
Downstream gene id
SNP gene ids340267
Upstream gene distance
Downstream gene distance
SNP risk allelers17168526-G
SNPsrs17168526
Merged0
SNP id current17168526
Contextsynonymous_variant
Intergenic0
Allele frequency
P value0.00000006
Pvalue mlog7.22184874961635
P value text(AA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001533