SNP Detail For rs17158807
1.Mapping Information
Human SNP ID rs17158807
Human chromosome chr15
Human SNP position 83580708
Pig chromosome chr7
Pig SNP position 56908906
2.Annotation Information
PubMed ID26584805
JournalGenes Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/26584805
StudyA genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.
Disease/TraitPlasma omega-6 polyunsaturated fatty acid levels (linoleic acid)
Initial sample717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls
Replication sampleNA
Region15q25.2
Chromosome idchr15
Chromosome position83580708
Reported geneNR
Mapped geneSH3GL3
Upstream gene id
Downstream gene id
SNP gene ids6457
Upstream gene distance
Downstream gene distance
SNP risk allelers17158807-T
SNPsrs17158807
Merged
SNP id current17158807
Contextintron_variant
Intergenic0
Allele frequency0.0822
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.0412
%95 Ci[0.024-0.058] unit increase
PlatformIllumina [up to 1980188] (imputed)
CNVN
Mapped traitlinoleic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006807
Study accessionGCST003239